B-cell receptor recombinations in lung adenocarcinoma exome files correlate with a higher overall survival rate

YN Tu, WL Tong, BM Callahan… - Anticancer …, 2020 - ar.iiarjournals.org
Background/Aim: While there has been a rapid development in genomic data mining
approaches for T-cell receptor recombinations (TcR), less emphasis has been placed on B …

[HTML][HTML] Lung tumor exome files with T-cell receptor recombinations: a mouse model of T-cell infiltrates reflecting mutation burdens

YN Tu, WL Tong, TJ Fawcett, G Blanck - Laboratory Investigation, 2017 - nature.com
Tumor exomes and RNASeq data were originally intended for obtaining tumor mutations
and gene expression profiles, respectively. However, recent work has determined that tumor …

T cell receptor gene recombinations in human tumor specimen exome files: detection of T cell receptor-β VDJ recombinations associates with a favorable oncologic …

MD Samy, WL Tong, JM Yavorski, WJ Sexton… - Cancer Immunology …, 2017 - Springer
Understanding tumor-resident T cells is important for cancer prognosis and treatment
options. Conventional, solid tumor specimen exome files can be searched directly for …

[HTML][HTML] The fusion gene landscape in Taiwanese patients with non-small cell lung cancer

YS Chang, SJ Tu, JC Yen, YT Lee, HY Fang, JG Chang - Cancers, 2021 - mdpi.com
Simple Summary Human cancer genomes show a variety of alterations, such as single base
changes, deletions, insertions, copy number changes, and gene fusions. Analyzing fusion …

[CITATION][C] Era of comprehensive cancer genome analyses.

Y Yatabe, RK Thomas - Journal of Clinical Oncology: Official Journal …, 2014 - europepmc.org
Era of comprehensive cancer genome analyses. - Abstract - Europe PMC Sign in | Create an
account https://orcid.org Europe PMC Menu About Tools Developers Help Contact us …

[HTML][HTML] Lung cancer genomic signatures

MT Agulló-Ortuño, F López-Ríos, L Paz-Ares - Journal of Thoracic Oncology, 2010 - Elsevier
Background: Lung cancer (LC) is the dominant cause of death by cancer in the world, being
responsible for more than a million deaths annually. It is a highly lethal common tumor that is …

[HTML][HTML] Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types

CP Giacomini, S Sun, S Varma, AH Shain… - PLoS …, 2013 - journals.plos.org
Gene fusions, like BCR/ABL1 in chronic myelogenous leukemia, have long been recognized
in hematologic and mesenchymal malignancies. The recent finding of gene fusions in …

Genome-wide detection of chimeric transcripts in early-stage non-small cell lung cancer

Y Ilnytskyy, L Petersen, JB McIntyre… - Cancer Genomics & …, 2023 - cgp.iiarjournals.org
Abstract Background/Aim: Lung cancer remains the main culprit in cancer-related mortality
worldwide. Transcript fusions play a critical role in the initiation and progression of multiple …

[HTML][HTML] Gene Fusion Detection in NSCLC Routine Clinical Practice: Targeted-NGS or FISH?

L Pecciarini, E Brunetto, G Grassini, V De Pascali… - Cells, 2023 - mdpi.com
The ability to identify the broadest range of targetable gene fusions is crucial to facilitate
personalized therapy selection for advanced lung adenocarcinoma (LuADs) patients …

Recovery of immunoglobulin VJ recombinations from pancreatic cancer exome files strongly correlates with reduced survival

JC Kinskey, YN Tu, WL Tong, JM Yavorski… - Cancer …, 2018 - Springer
We assessed pancreatic cancer, lymphocyte infiltrates with a computational genomics
approach. We took advantage of tumor-specimen exome files available from the cancer …