Synthesis of N-hydroxycinnamides capped with a naturally occurring moiety as inhibitors of histone deacetylase

ChemMedChem. 2010 Apr 6;5(4):598-607. doi: 10.1002/cmdc.200900494.

Abstract

Histone deacetylase (HDAC) inhibitors are regarded as promising therapeutics for the treatment of cancer. All reported HDAC inhibitors contain three pharmacophoric features: a zinc-chelating group, a hydrophobic linker, and a hydrophobic cap for surface recognition. In this study we investigated the effectiveness of osthole, a hydrophobic Chinese herbal compound, as the surface recognition cap in hydroxamate-based compounds as inhibitors of HDAC. Nine novel osthole-based N-hydroxycinnamides were synthesized and screened for enzyme inhibition activity. Compounds 9 d, 9 e, 9 g exhibited inhibitory activities (IC(50)=24.5, 20.0, 19.6 nM) against nuclear HDACs in HeLa cells comparable to that of suberoylanilide hydroxamic acid (SAHA; IC(50)=24.5 nM), a potent inhibitor clinically used for the treatment of cutaneous T-cell lymphoma (CTCL). While compounds 9 d and 9 e showed SAHA-like activity towards HDAC1 and HDAC6, compound 9 g was more selective for HDAC1. Compound 9 d exhibited the best cellular effect, which was comparable to that of SAHA, of enhancing acetylation of either alpha-tubulin or histone H3. Molecular docking analysis showed that the osthole moiety of compound 9 d may interact with the same hydrophobic surface pocket exploited by SAHA and it may be modified to provide class-specific selectivity. These results suggest that osthole is an effective hydrophobic cap when incorporated into N-hydroxycinnamide-derived HDAC inhibitors.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Catalytic Domain
  • Computer Simulation
  • Coumarins / chemical synthesis*
  • Coumarins / chemistry
  • Coumarins / pharmacology
  • Coumarins / therapeutic use
  • HeLa Cells
  • Histone Deacetylase Inhibitors / chemical synthesis*
  • Histone Deacetylase Inhibitors / chemistry
  • Histone Deacetylase Inhibitors / therapeutic use
  • Histone Deacetylases / chemistry*
  • Histone Deacetylases / metabolism
  • Humans
  • Hydroxamic Acids / chemical synthesis*
  • Hydroxamic Acids / chemistry
  • Hydroxamic Acids / pharmacology
  • Hydroxamic Acids / therapeutic use
  • Lymphoma, T-Cell / drug therapy
  • Vorinostat

Substances

  • Coumarins
  • Histone Deacetylase Inhibitors
  • Hydroxamic Acids
  • N-hydroxy-3-(2-(3,4-dihydro-8-isopentyl-2-oxo-2H-chromen-7-yloxy)ethoxy)cinnamide
  • N-hydroxy-3-(3-(3,4-dihydro-8-isopentyl-2-oxo-2H-chromen-7-yloxy)propoxy)cinnamide
  • N-hydroxy-4-(2-(3,4-dihydro-8-isopentyl-2-oxo-2H-chromen-7-yloxy)ethoxy)cinnamide
  • Vorinostat
  • Histone Deacetylases
  • osthol