Biological evaluation, chelation, and molecular modeling studies of novel metal-chelating inhibitors of NF-kappaB-DNA binding: structure activity relationships

J Med Chem. 2006 Jun 15;49(12):3595-601. doi: 10.1021/jm050617x.

Abstract

Previously, we have reported that aurintricarboxylic acid (ATA) is one of the most potent inhibitors of the DNA binding of transcription factor NF-kappaB. We now report the NF-kappaB-DNA binding inhibitory activity of ATA analogues. An electrophoretic mobility shift assay has shown that bromopyrogallol red (BPR) is the most effective inhibitor of NF-kappaB-DNA binding among the studied analogues. The molecular modeling studies showed that BPR makes a strong network of hydrogen bonds with the DNA-binding region of the p50 subunit of NF-kappaB and has electronegative potential on its peripheral surface. Because zinc has been reported to influence the DNA binding of NF-kappaB, the interaction of these analogues with zinc was studied. Chemical speciation and formation-constant studies showed that BPR forms the most stable 1:1 complex with zinc. BPR has also been found to be the most potent antioxidant among the studied analogues.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antiviral Agents / chemistry*
  • Aurintricarboxylic Acid / analogs & derivatives*
  • Aurintricarboxylic Acid / chemistry*
  • Chelating Agents / chemistry*
  • DNA / chemistry
  • DNA / metabolism*
  • Electricity
  • Electrophoretic Mobility Shift Assay
  • Hydrogen Bonding
  • Models, Molecular*
  • NF-kappa B / chemistry
  • NF-kappa B / metabolism*
  • NF-kappa B p50 Subunit / chemistry
  • Organometallic Compounds / chemistry*
  • Protein Binding
  • Pyrogallol / chemistry
  • Structure-Activity Relationship
  • Zinc* / chemistry

Substances

  • Antiviral Agents
  • Chelating Agents
  • NF-kappa B
  • NF-kappa B p50 Subunit
  • Organometallic Compounds
  • Pyrogallol
  • Aurintricarboxylic Acid
  • DNA
  • Zinc