Abstract
During malignant transformation, cancer cells have to evade cell-intrinsic tumor suppressor mechanisms including apoptosis, thus acquiring a phenotype that is relatively resistant to clinically applied anticancer therapies. Molecular characterization of apoptotic signal transduction defects may help to identify prognostic markers and to develop novel therapeutic strategies. To this end we have undertaken functional analyses of drug-induced apoptosis in human non-small cell-lung cancer (NSCLC) cells. We found that primary drug resistance correlated with defects in apoptosome-dependent caspase activation in vitro. While cytochrome c-induced apoptosome formation was maintained, the subsequent activation of caspase-9 and -3 was abolished in resistant NSCLC. The addition of recombinant pp32/putative human HLA class II-associated protein (pp32/PHAPI), described as a putative tumor suppressor in prostate cancer, successfully restored defective cytochrome c-induced caspase activation in vitro. Conditional expression of pp32/PHAPI sensitized NSCLC cells to apoptosis in vitro and in a murine tumor model in vivo. Immunohistochemical analyses of tumor samples from NSCLC patients revealed that the expression of pp32/PHAPI correlated with an improved outcome following chemotherapy. These results identify pp32/PHAPI as regulator of the apoptosis response of cancer cells in vitro and in vivo, and as a predictor of survival following chemotherapy for advanced NSCLC.
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Main
During cancer initiation and progression, malignant cells have to acquire strategies to evade the various tumor suppressor mechanisms, which guard genomic integrity at the cellular and organismal levels.1 Apoptosis, a genetically predetermined cell death program essential for the development and homeostasis of complex organisms, is an important tumor suppressive mechanism.2 ‘Minus signals’ such as the lack of survival factors, as well as ‘plus signals’ such as the deregulated activation of proto-oncogenes or the accumulation of DNA strand breaks equally trigger apoptosis through activation of an evolutionary conserved family of enzymes called caspases. Apoptotic caspases can be assigned to two categories: those with long prodomains, such as caspases-8 and -9, contain caspase recruitment (CARD) or death-effector domains (DED) preceding their catalytic domain. They act upstream of those caspases with short prodomains, including caspase-3, -6 and -7, which execute the death program by cleaving their cellular substrates. Hence, caspase activation proceeds in a two-step process, which is initiated by the formation of complexes to recruit and activate caspases with long prodomains.3 Examples are the ‘death-inducing signaling complex’ (DISC) composed of ligand-activated ‘death receptors’ and the adapter FADD to activate caspase-8, and the ‘apoptosome’ complex, which is formed by cytochrome c and the adapter Apaf-1 to activate caspase-9. Activated caspase-8 and -9 cleave the zymogen forms of effector caspases to unleash active enzymes.4 Current understanding places the two pathways upstream of the formation of activator complexes. The ‘extrinsic’ pathway is initiated by the interaction of ‘death receptors’ of the tumor necrosis factor receptor family with their respective ligands, and triggers DISC formation. Activation of the ‘intrinsic’ pathway occurs in response to cellular stresses and is regulated by the BCL-2 family of proteins, which guard the integrity of the mitochondrial outer membrane (MOM). Following permeabilization of the MOM, cytochrome c is released into the cytoplasm to induce a conformational change of the adapter Apaf-1 that is essential for apoptosome formation, and which may provide another level of regulation. Crosstalk between these two pathways is provided through the activating cleavage of the BH3-only protein BID by DISC-activated caspase-8, which leads to permeabilization of the MOM and apoptosome formation through the ‘extrinsic’ pathway.5
Biochemical evidence and studies using gene-targeted mice place the ‘intrinsic’ pathway of caspase activation downstream of the p53 tumor suppressor gene, which is an important inhibitor of cancer initiation and progression, that is inactivated by mutation in approximately half of all human cancers.6 Loss of p53 not only facilitates cancer development, but also confers resistance to cytotoxic anticancer drugs in vitro and in vivo, and these effects are phenocopied by genetic inhibition of the ‘intrinsic’ pathway of caspase activation.7, 8 Accordingly, defects in the apoptotic program downstream of p53 promote cancer initiation and progression, and result in resistance to anticancer therapies. In fact, genetic alterations of BCL-2 family members have been described in various human cancers, such as follicular lymphoma, breast cancer, colorectal cancer or melanoma.9 The expression of BCL-2 proteins correlates with prognosis in some studies of non-small-cell-lung cancer (NSCLC) patients.10 In contrast, loss of caspase-9 or the adapter Apaf-1 failed to accelerate Myc-induced lymphomagenesis in mice,11 and inactivating mutations or loss of expression of these factors are rarely observed in human cancers.12, 13 A correlation of nuclear localization of Apaf-1 or caspase expression has been reported to correlate with prognosis in resected NSCLC,14, 15 and studies in cancer cell lines and human leukemias point at a contribution of defective caspase activation to drug resistance by a yet undefined mechanism.16, 17
To this end we have analyzed the role of caspase activation defects in constitutive drug resistance of human NSCLC. By combined biochemical and genetic studies, we have identified hypofunction of pp32/putative HLA class II-associated protein I (pp32/PHAPI) as resistance mechanism to apoptosis induced by cancer therapy and additional stresses in vitro and in vivo. We further show that the absence of immunohistochemically detectable pp32/PHAPI expression correlates with poor survival following chemotherapy for NSCLC.
Results
Defects in apoptosome-dependent caspase activation in drug-resistant NSCLC
As a model of drug-resistant cancer, we have used cell lines derived from patients suffering from NSCLC, which were either proficient (A549, NCI-H460) or deficient (NCI-H1299, Calu-6) for the p53 tumor suppressor protein. Treating these cells with apoptotic stimuli, such as staurosporine, paclitaxel, etoposide, actinomycin D, UV-C and γ-radiation, we observed a similar pattern of sensitivity and resistance, which was largely independent of the respective inducer of apoptosis (Figure 1a, and not shown). As these agents trigger signals via the ‘intrinsic’ pathway of caspase activation, we reasoned whether apoptosis sensitivity of NSCLC cells correlated with the capability to activate caspases in an apoptosome-dependent manner. To this end, extracts were prepared from relatively resistant and sensitive NSCLC cells and were incubated with cytochrome c and dATP. Minimal requirements for cytochrome c/dATP-induced caspase activity in vitro are the adapter Apaf-1, the activator caspase-9 and the effector caspase-3.18 This system recapitulates apoptosome-dependent caspase activation, and thus serves as a functional readout for the ‘post-mitochondrial’ step of the apoptotic signal transduction cascade via the ‘intrinsic’ pathway. The presence of essential factors was confirmed by immunoblotting analysis of extracts derived from sensitive and resistant NSCLC lines, and the extent of protein expression apparently failed to correlate with drug sensitivity (Supplementary Figure 1A). Cytochrome c/dATP readily induced caspase activation in extracts derived from apoptosis-sensitive NSCLC cells or control extracts from hematopoietic cells, as demonstrated by cleavage of a consensus caspase substrate as well as by the generation of caspase cleavage products indicative of activation (Figure 1b and c). In contrast, extracts prepared from drug-resistant NSCLC cells exhibited a blunted response to cytochrome c/dATP (Figure 1b and c).
For activation caspase-9 has to be recruited into the apoptosome complex, which is formed by seven molecules of the adapter Apaf-1 upon an ATP/dATP-driven conformational change.19 Hence, caspase activation defects in NSCLC could result from failure to assemble the Apaf-1/caspase-9 complex. To study cytochrome c/dATP-induced apoptosome formation, cellular extracts were subjected to gel-filtration chromatography followed by immunoblot analysis of the resulting size fractions. Incubating sensitive and resistant cellular extracts with cytochrome c/dATP we found that Apaf-1 and caspase-9 equally shifted into the high-molecular-weight apoptosome complex (Figure 2a and b). However, extracts prepared from resistant cell lines failed to exhibit specific free cleavage products of caspase-9 (p37) and caspase-3 (p17), which are indicative of effector caspase activation (Figure 2a and b, and not shown). This was consistent with a functional defect at the level of caspase-9 or caspase-3 in drug-resistant A549 and NCI-H1299 NSCLC cells, which occurs downstream of apoptosome formation and recruitment of caspase-9. Caspase-9 and -3 protein expression was detectable (Supplementary Figure 1A) and wild-type DNA sequences were confirmed (not shown) in all NSCLC cell lines analyzed in this study, thus arguing for the presence of inhibitory factor(s) or the absence of stimulatory factor(s).
pp32/PHAPI restores caspase activation in NSCLC
Recently, pp32/PHAPI was identified as an important cofactor of caspase activation downstream of apoptosome formation.20, 21 Moreover, pp32/PHAPI was found in the endoplasmic reticulum-associated complex (SET) complex, which is implied in the regulation of nuclear DNA fragmentation by the cytotoxic T lymphocyte protease granzyme A,22 supporting its role as regulator of death-inducing proteases. To study whether pp32/PHAPI could overcome the caspase activation defect observed in resistant NSCLC cells, cellular extracts were supplemented with recombinant human pp32/PHAPI followed by incubation with cytochrome c/dATP (Figure 3a). Indeed, the addition of pp32/PHAPI facilitated early caspase activation in drug-resistant NSCLC cells, which are hyporesponsive to cytochrome c/dATP in vitro (Figure 3a and b). Exogenously added pp32/PHAPI also accelerated cytochrome c/dATP-induced caspase activation in drug-sensitive NCI-H460 NSCLC cells, which are fully capable of apoptosome-dependent caspase activation (Figure 1b and c, and not shown). This suggests that beyond a certain threshold, pp32/PHAPI is a general enhancer of apoptosome-dependent caspase activation.
As all NSCLC cell lines endogenously expressed comparable pp32/PHAPI protein levels, we reasoned whether posttranslational regulation of pp32/PHAPI stability could impact on sensitivity to cytochrome c/dATP. To this end the expression of endogenous pp32/PHAPI was studied in NSCLC cells treated with the translation inhibitor cycloheximide (CHX) and the proteasome inhibitor bortezomib, respectively. Following CHX treatment, apoptosis-sensitive NCI-H460 and Calu-6 cells exhibited enhanced pp32/PHAPI stability, as compared with apoptosis-resistant A549 and NCI-H1299 cells (Figure 4). In contrast, bortezomib given at concentrations that are biologically active in NSCLC cells had no effect on pp32/PHAPI levels in vitro (not shown). Hence, proteasome-independent post translational mechanisms might impact on pp32/PHAPI protein stability.
In order to assess whether increasing the availability of caspases could alleviate the requirement of the cofactor pp32/PHAPI, purified bioactive human caspases-9 and -3 (Figure 5a) were added to cellular extracts in the presence or absence of cytochrome c/dATP. Neither the addition of caspase-9 nor caspase-3 overcame the hyporesponsiveness to cytochrome c/dATP observed in extracts prepared from drug-resistant NSCLC cells (Figure 5b and c), thus supporting the requirement of sufficiently high levels of pp32/PHAPI.
The X-linked inhibitor of apoptosis (Xiap) was described as an inhibitor of caspase activation, which in turn is repressed by the second mitochondria-derived activator of apoptosis (Smac, or DIABLO in mice).23, 24 Genetic or pharmacologic mimetics of Smac were shown to facilitate caspase activation and apoptosis in several preclinical tumor models.25, 26 While constitutive expression of Xiap and Smac was confirmed in all NSCLC cell lines analyzed in this study, protein expression levels did not correlate with drug sensitivity or responsiveness to cytochrome c/dATP in vitro (Supplementary Figure 1A). In contrast to reports from different experimental settings,21, 27 Xiap failed to co-elute with the apoptosome complex in extracts derived from cytochrome c/dATP-sensitive and -resistant cell lines, making unlikely that Xiap inhibits caspase-9 at the level of the apoptosome in this system (Supplementary Figure 2A). Survivin is another IAP protein that was reported to inhibit caspase activation in cancer cells despite its physiological role as a chromosomal passenger protein regulating mitosis.28 In gel-filtration analysis of drug-resistant NSCLC cells, Survivin failed to co-elute with caspase-9 in the apoptosome fraction, thus arguing against a role for Survivin in the caspase activation defect observed in our experimental system (Supplementary Figure 2A). By means of immunoblot analysis of cytochrome c/dATP-sensitive and resistant cellular extracts following treatment with a crosslinking agent, we were able to detect dimers of caspase-3, but no additional species of caspase-3 bound to a potential inhibitory factor (Supplementary Figure 2B). Moreover, conditional expression (Supplementary Figure 1B) of full-length or amino-terminally truncated Smac (resulting in its cytoplasmic targeting) as well as addition of a peptide-based Smac mimetic25 failed to sensitize NSCLC cells to apoptosis (Supplementary Figure 2C, and not shown) or to suppress spontaneous or staurosporine-inhibited clonogenic survival (Supplementary Figure 1C).
These results are in support of pp32/PHAPI protein stability as an important determinator of caspase activation. They argue against a role for insufficient caspase expression, or inhibition of caspases by Xiap and alternative Smac-sensitive factors in apoptosis resistance of NSCLC.
Expression of pp32/PHAPI correlates with improved outcome following chemotherapy for NSCLC
Against this background, we reasoned whether the expression of pp32/PHAPI in tumor cells correlated with the clinical course of NSCLC patients treated with cytotoxic chemotherapy. To this end we analyzed tumor samples from 58 patients chemotherapy-naïve patients suffering from stage IV NSCLC, who were treated within a randomized trial receiving either gemcitabine/vinorelbine/cisplatin or gemcitabine/vinorelbine followed by paclitaxel or paclitaxel/cisplatin. Immunhistochemical staining of paraffin-embedded tumor samples revealed cytoplasmatic staining with an immunoreactivity score (IRS) of at least 329 for pp32/PHAPI in 24 patients (41%), whereas 34 cases (59%) were scored negative (Figure 6a). Cross-table analysis (two-sided Pearson χ2-test) showed no association of pp32/PHAPI staining with sex, age (dichotomized <70 versus ⩾70 years) and ECOG performance status. Assessing overall survival, Kaplan–Meier plots (Figure 6b) indicated a survival advantage for pp32/PHAPI-positive patients (P=0.026, log rank). Median survival was 179 and 276 days for pp32/PHAPI-negative and pp32/PHAPI-positive patients, respectively. Likewise, the survival rate at 1 year differed substantially between the pp32/PHAPI-negative (17.6%) and the pp32/PHAPI-positive group (45.8%). Hence, in this prospectively treated cohort of advanced NSCLC patients, the cytoplasmatic expression of pp32/PHAPI was a strong predictor of outcome following chemotherapy.
Conditional expression of pp32/PHAPI sensitizes NSCLC cells to apoptosis
A moderate increase of pp32/PHAPI protein levels facilitated cytochrome c/dATP-induced caspase activation in vitro (Figure 3). To study this effect at a cellular level, we generated a vector for doxycycline-induced conditional expression of the human pp32/PHAPI cDNA in NSCLC cells (Figure 7a). Increasing the availability of cellular pp32/PHAPI resulted in a profound suppression of clonogenic survival of drug-resistant NSCLC cells (Figure 7a and b). This was consistent with a tumor suppressive activity of pp32/PHAPI, which had been reported in previous studies.30 Interestingly, conditional expression of pp32/PHAPI-sensitized resistant NSCLC cells to caspase activation and apoptosis induced by several proapoptotic stimuli (Figure 7b–d).
This tumor suppressive activity of conditionally expressed pp32/PHAPI could be confirmed in vivo using NSCLC cells xenografted into immune-deficient non-obese diabetic/severe combined immunodeficient (NOD/SCID) mice (Figure 8a). Importantly, when exponentially growing lung cancers were established in mice, delayed conditional expression of pp32/PHAPI not only halted further tumor growth, but also resulted in a pronounced reduction in tumor size (Figure 8b). Explanted tumors from mice with doxycycline-induced pp32/PHAPI expression exhibited large central regions of cells with strong staining for fragmented DNA, whereas the pool of mitotic (i.e., proliferating) cells located in glandular structures within the tumor cortex remained unaffected (Figure 8c and d). The central apoptotic region, which was also observed to a much lesser extent in large xenografts in the absence of conditional pp32/PHAPI expression (Supplementary Figure 1D), most likely resulted from reduced supply with survival factors due to an insufficient tumor vasculature. However, conditional expression of pp32/PHAPI dramatically enlarged these central apoptotic regions (Supplementary Figure 1D), which can be interpreted as pp32/PHAPI sensitizing cancer cells to apoptosis under limiting survival factor conditions in vivo.
Discussion
Many tumor suppressor proteins and cancer therapies utilize common intracellular effector mechanisms such as apoptosis, cell-cycle arrest and senescence, to exert their biological activity. Accordingly, defects in tumor suppressor pathways, which are invariantly acquired during tumor initiation and progression, may also impair the efficacy of cancer therapy. This apparent dilemma can, however, be converted into an advantage by identifying molecular targets at the converging points of important antitumor effector pathways. Therapeutic modulation of such targets could equally restore tumor suppressor functions as well as sensitivity to anticancer drugs, and thus may serve the development of novel strategies for cancer treatment. This approach requires a detailed molecular understanding of functional deregulations of the underlying pathways in human cancers.
Against this background, we have analyzed apoptotic caspase activation defects in human NSCLC models. We have focused on ‘post-mitochondrial’ apoptosome-dependent caspase activation, as this step is the converging point of the ‘intrinsic’ pathway and the ‘extrinsic pathway’ (at least in ‘type II cells’ requiring mitochondrial amplification of death receptor-induced caspase activation), and depends on a small number of genetically and functionally non-redundant molecules. Biochemical and genetic evidence has confirmed that Apaf-1, caspase-9 and (under most circumstances) cytochrome c are necessary and sufficient for apoptosome-mediated activation of effector caspases.18, 31, 32, 33, 34 This compares favorably to the ‘pre-mitochondrial’ step of MOM permeabilization, which is regulated by a complex rheostat of more than 20 partially redundant members of the BCL-2 family of proteins.
Interestingly, we found that drug-resistant NSCLC cells exhibit hyporesponsiveness to cytochrome c/dATP-induced caspase activation despite the presence of Apaf-1, caspases-9 and -3. This hyporesponsiveness could be overcome by a moderate increase in pp32/PHAPI in vitro. pp32/PHAPI, also known as acidic nuclear phosphoprotein 32A or leucin-rich acidic nuclear protein, belongs to the leucine-rich family of proteins, which is implied in a variety of pathways such as chromatin remodeling, cytoskeletal dynamics, signal transduction or protein degradation.35 Recently, pp32/PHAPI and additional PHAP proteins were biochemically characterized as cofactors of caspase activation in HeLa cell extracts. In this study, pp32/PHAPI facilitated recruitment and accelerated activation of caspase-9 downstream of apoptosome formation.20 This is consistent with the effects of pp32/PHAPI observed in our model, which overcomes hyporesponsiveness to cytochrome c/dATP that occurs despite successful apoptosome formation. In another study, recombinant pp32/PHAPI enhanced the proteolytic activity of Jurkat cellular extracts and of apoptosomes isolated from these extracts in a Xiap-independent manner. In contrast to the previous work,20 pp32/PHAPI also enhanced the activity of recombinant caspase-3, thus adding another possible level of apoptosis regulation by pp32/PHAPI.21 Interestingly, pp32/PHAPI was also found in the SET complex together with the DNase NM23-H1. The protease granzyme A secreted from cytotoxic T lymphocytes cleaves SET to release and activate NM23-H1, which executes caspase-independent DNA fragmentation. A regulatory function of pp32/PHAPI in this pathway is not yet defined, but it has been implied in the nuclear translocation of granzyme A.22 All these observations are in line with a role for PHAPI in the regulation of cellular enzymes involved in death processes.
Recently, the generation of pp32/PHAPI-deficient mice has been reported, and extensive analyses of their general and neuronal development failed to detect any abnormalities.36 While apoptosis regulation has not been specifically addressed in this study, the knockdown of pp32/PHAPI in HeLa cells by RNAi technology has also been reported as inconclusive.20 These negative reports were explained by possible overlapping functions of the multiple forms of PHAP proteins, some of which have probably arisen by gene duplication.
Overexpression of pp32/PHAPI was shown to suppress oncogenic transformation,30 and pp32/PHAPI and homologs located on different chromosomes were implied in the regulation of human prostate cancer.37 In our study, conditional pp32/PHAPI inhibited clonogenic survival and sensitized intact NSCLC cells to caspase activation by apoptotic stimuli in vitro. Moreover, increasing the level of pp32/PHAPI lowered the resistance of NSCLC cells to the depletion of survival factors in vivo, as demonstrated by the dramatic increase in spontaneous apoptosis in the undersupplied central regions of lung cancer xenografts. Most importantly, our analysis of tumor samples from patients with NSCLC revealed a strong correlation between the absence of immunohistochemically detectable cytoplasmic pp32/PHAPI expression and poor outcome following chemotherapy. Collectively, these findings suggest that pp32/PHAPI controls the drug response of NSCLC cells, and is a prognostic marker in NSCLC patients treated with anticancer chemotherapy. A recent study in breast cancer cells reported that higher cellular levels of pp32/PHAPI correlated with increased sensitivity to apoptosome-dependent caspase activation,38 thus supporting our observation that the level of pp32/PHAPI determines the responsiveness to cytochrome c/dATP. Here, we observed comparable expression levels but a decreased stability of endogenous pp32/PHAPI in drug-resistant NSCLC cells, which might contribute to their phenotype.
In conclusion, we have characterized pp32/PHAPI as an important cofactor of apoptosome-dependent caspase activation in NSCLC, which determines the sensitivity to apoptosis occurring under various conditions in vitro and in vivo. Immunohistochemical detection of cytoplasmic pp32/PHAPI in tumor cells defines a subgroup of advanced NSCLC patients, which exhibit improved survival following cytotoxic chemotherapy. The level and/or stability of pp32/PHAPI might impact on the responsiveness of organs and tissues to physiological and pathological death stimuli. Moreover, pp32/PHAPI seems to be involved in tumor suppression as well as responsiveness to anticancer therapies, thus making it a promising target for cancer treatment.
Materials and Methods
Cell culture, apoptosis assays and retroviral transductions
Unless otherwise indicated, cell lines were maintained in full DMEM or RPMI1640 supplemented with fetal bovine serum (FBS, PAA), L-glutamine, penicillin and streptomycin (Gibco). Conditional transgene expression was achieved in cells growing in medium supplemented with tetracycline-free FBS (Clontech) by addition of doxycycline (1 μg/ml; Sigma). The Phoenix packaging cell line (provided by Dr. GP Nolan) was used for generation of retroviruses following a standard calcium phosphate transfection protocol. Transduction efficacies were monitored in parallel experiments by flow cytometric detection of enhanced green fluorescent protein expression. Cell-cycle analysis and detection of apoptosis were carried out by flow cytometric determination of DNA content following propidium iodide (Sigma) staining of permeabilized cells, or by detection of FITC-positive cells following staining with fluorochromic caspase substrate FITC–VAD-fmk (Oncogene).
Plasmids, antibodies and reagents
The human pp32/PHAPI cDNA was amplified (sense primer 5′-AGAGATGGAGATGGGCAGAC-3′, antisense primer 5′-AGTCATCATCTTCTCCCTCA-3′) and cloned into the retroviral vector pRevTRE (Clontech) to allow conditional expression controlled by doxycycline and rt-TA.39 Polymerase chain reaction-generated cDNA-encoding full-length and amino-terminally truncated human Smac fused to a carboxy-terminal FLAG tag were also cloned into pRevTRE. All vector inserts were confirmed by sequencing. Prokaryotic expression vectors for human caspase-9, caspase-3 and PHAPI were generous gifts from Drs. BB Wolf, GS Salvesen and X Wang. The following primary antibodies were used for immunoblotting analysis: actin (C4; ICN), FLAG (M2; Sigma), Apaf-1 (MAB868; R&D Systems), caspase-3 (ab7850; Abcam), caspase-9 (MAB4609; Chemicon), Survivin (NB500-201; Novus), Xiap (AF822; R&D Systems). Smac and pp32 were detected by antisera and antibodies generously provided by Drs. X Wang, J Lieberman and DC Pallas. Doxycycline, staurosporine, bortezomib and anticancer drugs were purchased from Sigma or the Hospital Pharmacy of the Johannes Gutenberg University.
Cell-free caspase activation and gel-filtration chromatography
For preparation of extracts, cell pellets were resuspended in CEB (20 mM Hepes–KOH pH 7.5, 10 mM KCl, 1 mM MgCl2, 1 mM EGTA, 0.25 M sucrose, 2 mM DTT, 10 μM Cytochalasin B, Complete™ protease inhibitors; Roche) and vigorously broken using a dounce homogenizer. For caspase activation, extracts (protein concentration ⩾10 mg/ml) were incubated with 10 μM cytochrome c with or without 1 mM dATP (Sigma) at 37°C. The kinetics of the resulting caspase-3-like activity were measured colorimetrically using DEVD-p-nitroaniline (Calbiochem) as substrate. Gel-filtration chromatography was performed using a XK 16 × 60 column (Pharmacia) packed with Toyopearl HW-55F (Tosoh Biosep). Following ultracentrifugation at 100 000 × g, S100 extracts were loaded on the column and size fractions were eluted with EB (20 mM Hepes pH 7.0, 50 mM NaCl, 5% saccharose, 5 mM DTT, 0.1% CHAPS).
Expression and purification of recombinant proteins
Polyhistidine-tagged human caspase-9 and -3 (vectors provided by Drs. GS Salvesen and BB Wolf) and pp32/PHAPI (vector provided by Dr. X Wang) were expressed in the BL21 strain of Escherichia coli, and purified under native conditions using Ni-NTA agarose (Qiagen) with different imidazole concentrations in the wash and elution steps. Recombinant GST-tagged pp32/PHAPI was purchased from Calbiochem.
Analysis of tumor samples
Data were analyzed from 85 chemotherapy-naïve patients suffering from stage IV NSCLC, who were treated in the AIO/AASLC 03 trial at our institution, and who had provided written informed consent for scientific analyses of surplus tumor samples. Sufficient tumor material was available from 58 patients who were included in the analysis. The median age of this cohort was 60 years (range 36–75 years); the Eastern Cooperative Oncology Group (ECOG) performance score was 0 in 16% and 1 in 84% of patients, respectively. Slides from paraffin-embedded tumor biopsies were stained using a computer-controlled autostainer (Dako TechMate 500; Dako) and the Dako EnVison system using a monoclonal anti-human acidic nuclear phosphoprotein 32A (clone RJ1) antibody (Alexis Biochemicals, Grünberg, Germany), and a peroxidase-labeled secondary antibody (Dako EnVison). The staining reaction was visualized by adding DAB substrate (Dako EnVision), and sections were counterstained in hematoxylin. For quality control and reliability, staining was repeated twice. The slides were evaluated using the BX40 microscope (Olympus) connected to a digital imaging system. Classification according to the IRS immunoreactivity score29 was independently performed by two investigators (S Biesterfeld and R Wiewrodt). An IRS ⩾3 was considered positive. Statistical analysis was performed using SPSS V13 software. Kaplan–Meier plots were analyzed using the following tests: Log-rank (Mantel Cox), Breslow (generalized Wilcoxon) and Tarone-Ware. All patients had provided written informed consent, and studies were approved by the Ethics Committee of the Landesärztekammer Rheinland-Pfalz.
Animal model
Irradiated (150 rad) NOD/SCID mice received single subcutaneous flank injections of 10 × 106 transgenic lung cancer cells diluted in 200 μl saline. Tumor growth was monitored by bidimensional measurements using a calliper. For induction of conditional pp32/PHAPI expression in vivo, the drinking water was supplemented with doxycycline (1 mg/ml). All animal studies were conducted in compliance with institutional guidelines and were approved by the responsible regulatory authority (SGD Süd Rheinland-Pfalz).
Microscopy and histochemical analysis
Cells with apoptotic nuclei were visualized in cryosections by means of the TUNEL assay (In Situ Cell Death Detection kit; Roche) following the manufacturer's instructions. Mitotic cells were detected by standard immunohistochemistry using anti-Ki-67 (MIB1; Dianova) as the primary antibody. Photomicrographs were taken on a Leica DMR microscope connected to a Leica DFC480 digital camera and a computer system. Image analysis including quantitation of tumor areas was performed using the Leica IM500 software.
Abbreviations
- IRS:
-
immunoreactivity score
- NOD/SCID:
-
non-obese diabetic/severe combined immunodeficiency
- PHAPI:
-
putative human HLA class II-associated protein
- SET:
-
endoplasmic reticulum-associated complex
- Xiap:
-
X-linked Inhibitor of apoptosis
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Acknowledgements
We thank Drs. Klaus-Michael Debatin, Wolfgang Hillen, Judy Lieberman, Gary P Nolan, David C Pallas, Guy S Salvesen, Xiaodong Wang and Beni B Wolf for providing reagents. Monika Kröll, Melanie Guyot, Yvonne Höhn, Alexander Hohberger, Irmtrud Roth, Silke Mitschke and Nicole Koplin are thanked for technical assistance; Dr. Abdo Konur for help with microscopy; Drs. Martin Sebastian, Claudia Döring, Lars-Henning Schmidt and Joachim Makowski for help with the collection of patient data and material; Professor Thomas Haaf and Professor Christoph Huber for support and advice. This work was supported by grants from the Deutsche Krebshilfe (Max-Eder-Gruppe No. 106089), Deutsche Forschungsgemeinschaft (SCHU1541/3-1), and Wilhelm Sander-Stiftung (2005.136.1). MS, AZ, RW, SH, VB designed research and interpreted results; SH, AZ, RW, PSH, VB, MS carried out experiments; AK and SB analyzed data and provided technology; MS supervised the project and wrote the paper.
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Supplementary Information accompanies the paper on Cell Death and Differentiation website (http://www.nature.com/cdd)
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Hoffarth, S., Zitzer, A., Wiewrodt, R. et al. pp32/PHAPI determines the apoptosis response of non-small-cell lung cancer. Cell Death Differ 15, 161–170 (2008). https://doi.org/10.1038/sj.cdd.4402256
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DOI: https://doi.org/10.1038/sj.cdd.4402256
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