Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Letter
  • Published:

Increased efficiency of mRNA 3′ end formation: a new genetic mechanism contributing to hereditary thrombophilia

Abstract

The G→A mutation at position 20210 of the prothrombin or coagulation factor II gene (F2) represents a common genetic risk factor for the occurrence of thromboembolic events1,2,3. This mutation affects the 3′-terminal nucleotide of the 3′ untranslated region (UTR) of the mRNA and causes elevated prothrombin plasma concentrations1,2,3,4 by an unknown mechanism. Here, we show that the mutation does not affect the amount of pre-mRNA, the site of 3′ end cleavage or the length of the poly(A) tail of the mature mRNA. Rather, we demonstrate that the physiological F2 3′ end cleavage signal is inefficient and that F2 20210 G→A represents a gain-of-function mutation, causing increased cleavage site recognition, increased 3′ end processing and increased mRNA accumulation and protein synthesis. Enhanced mRNA 3′ end formation efficiency emerges as a novel principle causing a genetic disorder and explains the role of the F2 20210 G→A mutation in the pathogenesis of thrombophilia. This work also illustrates the pathophysiologic importance of quantitatively minor aberrations of RNA metabolism.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1: The F2 20210 G→A mutation causes an increased abundance of prothrombin protein and mRNA.
Figure 2: The F2 20210 G→A mutation enhances mRNA expression at a post-transcriptional level.
Figure 3: F2*G and F2*A mRNAs have identical 3′ UTRs and poly(A) tail lengths.
Figure 4: The F2 20210 G→A mutation causes an upregulation of 3′ end formation efficiency.

Similar content being viewed by others

References

  1. Poort, S.R., Rosendaal, F.R., Reitsma, P.H. & Bertina, R.M. A common genetic variation in the 3′-untranslated region of the prothrombin gene is associated with elevated plasma prothrombin levels and an increase in venous thrombosis. Blood 88, 3698–3703 (1996).

    CAS  Google Scholar 

  2. Makris, M. et al. Co-inheritance of the 20210A allele of the prothrombin gene increases the risk of thrombosis in subjects with familial thrombophilia. Thromb. Haemost. 78, 1426–1429 (1997).

    Article  CAS  Google Scholar 

  3. Tosetto, A., Missiaglia, E., Frezzato, M. & Rodeghiero, F. The VITA project: prothrombin G20210A mutation and venous thromboembolism in the general population. Thromb. Haemost. 82, 1395–1398 (1999).

    Article  CAS  Google Scholar 

  4. Cattaneo, M., Chantarangkul, V., Taioli, E., Santos, J.H. & Tagliabue, L. The G20210A mutation of the prothrombin gene in patients with previous first episodes of deep-vein thrombosis: prevalence and association with factor V G1691A, methylenetetrahydrofolate reductase C677T and plasma prothrombin levels. Thromb. Res. 93, 1–8 (1999).

    Article  CAS  Google Scholar 

  5. Lane, D.A. & Grant, P.J. Role of hemostatic gene polymorphisms in venous and arterial thrombotic disease. Blood 95, 1517–1532 (2000).

    CAS  PubMed  Google Scholar 

  6. Ross, J. & Pizarro, A. Human beta and delta globin messenger RNAs turn over at different rates. J. Mol. Biol. 167, 607–617 (1983).

    Article  CAS  Google Scholar 

  7. Salles, F.J., Richards, W.G. & Strickland, S. Assaying the polyadenylation state of mRNAs. Methods 17, 38–45 (1999).

    Article  CAS  Google Scholar 

  8. Chou, Z.F., Chen, F. & Wilusz, J. Sequence and position requirements for uridylate-rich downstream elements of polyadenylation signals. Nucleic Acids Res. 22, 2525–2531 (1994).

    Article  CAS  Google Scholar 

  9. Colgan, D.F. & Manley, J.L. Mechanism and regulation of mRNA polyadenylation. Genes Dev. 11, 2755–2766 (1997).

    Article  CAS  Google Scholar 

  10. Zhao, J., Hyman, L. & Moore, C. Formation of mRNA 3′ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis. Microbiol. Mol. Biol. Rev. 63, 404–445 (1999).

    Google Scholar 

  11. Chen, F., MacDonald, C.C. & Wilusz, J. Cleavage site determinants in the mammalian polyadenylation signal. Nucleic Acids Res. 23, 2614–2620 (1995).

    Article  CAS  Google Scholar 

  12. Batt, D.B., Luo, Y. & Carmichael, G.G. Polyadenylation and transcription termination in gene constructs containing multiple tandem polyadenylation signals. Nucleic Acids Res. 22, 2811–2816 (1994).

    Article  CAS  Google Scholar 

  13. van Hoof, A. & Parker, R. The exosome: a proteasome for RNA? Cell 99, 347–350 (1999).

    Article  CAS  Google Scholar 

  14. Burkard, K.T. & Butler, J.S. A nuclear 3′-5′ exonuclease involved in mRNA degradation interacts with poly(A) polymerase and the hnRNA protein Npl3p. Mol. Cell. Biol. 20, 604–616 (2000).

    Article  CAS  Google Scholar 

  15. Muhlrad, D. & Parker, R. Aberrant mRNAs with extended 3′ UTRs are substrates for rapid degradation by mRNA surveillance. RNA 5, 1299–1307 (1999).

    Article  CAS  Google Scholar 

  16. Thermann, R. et al. Binary specification of nonsense codons by splicing and cytoplasmic translation. EMBO J. 17, 3484–3494 (1998).

    Article  CAS  Google Scholar 

  17. Sambrook, J., Fritsch, E.F. & Maniatis, T. Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1989).

    Google Scholar 

  18. Neu-Yilik, G. et al. Splicing and 3′end formation in the definition of nonsense-mediated decay-competent human beta-globin mRNPs. EMBO J. 20, 532–540 (2001).

    Article  CAS  Google Scholar 

  19. Kugler, W., Enssle, J., Hentze, M.W. & Kulozik, A.E. Nuclear degradation of nonsense mutated beta-globin mRNA: a post-transcriptional mechanism to protect heterozygotes from severe clinical manifestations of beta-thalassemia? Nucleic Acids Res. 23, 413–418 (1995).

    Article  CAS  Google Scholar 

Download references

Acknowledgements

The work of these authors was financially supported by the Deutsche Forschungsgemeinschaft (DFG) and the Fritz-Thyssen-Stiftung.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Andreas E. Kulozik.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Gehring, N., Frede, U., Neu-Yilik, G. et al. Increased efficiency of mRNA 3′ end formation: a new genetic mechanism contributing to hereditary thrombophilia. Nat Genet 28, 389–392 (2001). https://doi.org/10.1038/ng578

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/ng578

This article is cited by

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing