Abstract
Background/Aim: PIK3CA mediates various cellular processes, such as transformation, tumor initiation and proliferation, and resistance to apoptosis. This study was conducted to identify the clinical significance and prognostic effect of PIK3CA mutations in patients with residual rectal cancer who underwent surgery after neoadjuvant chemoradiotherapy (NACRT). Patients and Methods: Formalin-fixed and paraffin-embedded surgical specimens were collected from 128 patients between January 2006 and December 2011 and analyzed using real-time polymerase chain reaction for hotspot mutations in exons 9 and 20 of the PIK3CA gene. Results: Of the 128 patients, 109 were analyzed and 19 were excluded because of poor DNA quality. Mutations in PIK3CA were identified in three patients (2.8%), all of which were detected in exon 20 of the PIK3CA gene. PIK3CA mutations significantly correlated with lymphatic invasion (p=0.016), lymph node metastasis (p=0.034), and higher pathological disease stage (p=0.040). By univariate analysis, patients with PIK3CA mutations were observed to have significantly shorter cancer-specific survival (CSS) (p=0.001) and disease-free survival (DFS) (p=0.006) than PIK3CA wild-type patients. However, PIK3CA mutations were not an independent prognostic factor for CSS (p=0.319) or DFS (p=0.219) in multivariate modeling. Conclusion: Our findings indicate that PIK3CA mutation plays a role in oncogenesis in rectal cancer and may be considered as a candidate therapeutic approach targeting the PIK3/Akt/mTOR pathway in patients with residual rectal cancer after NACRT.
Neoadjuvant chemoradiotherapy (NACRT) followed by total mesorectal excision (TME) has been established as the standard treatment for reducing large or locally advanced rectal cancers (1, 2). Patients with tumors who achieve a pathological complete response (ypCR) to NACRT have been shown to have higher disease-free survival rates than those with partial or no response (3, 4). However, pCR is generally achieved in only 8-30% of patients, and its predictive value depends partially on currently unknown molecular factors (4, 5). Similarly, following NACRT, most patients show partial or no response, and the tumor regression grade (TRG) is not an accurate prognostic factor for patient outcome. Therefore, the development of better predictive or prognostic markers is required for a more accurate stratification of patients with partial or no response to NACRT.
The phosphatidylinositol 3-kinase (PI3K) pathway is one of the most frequently activated and altered signaling pathways in human cancers, including breast, gastric, and colorectal cancers (CRC) (6-10). As this pathway plays essential roles in cellular activities, including cell growth and proliferation, metabolism, and survival, as well as in pathological processes, such as cancer progression, metastasis, and resistance to chemotherapy, the PI3K/AKT signaling pathway has been considered extremely important in the carcinogenesis process (10-12). This pathway involves the generation of phosphatidylinositol 3,4,5-trisphosphate (PIP3) by PI3K (9, 10). The PI3K family consist of p110 catalytic subunits (p110α and p110β) and a p85 regulatory subunit, and, in particular, phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha (PIK3CA), which provides instructions for production of the p110α protein, which, in turn, encodes the catalytic subunit of PI3K (9, 10). Missense mutations of PIK3CA have been discovered in numerous human cancers, which have been implicated in the oncogenic role of PIK3CA (9, 10, 13, 14). Hot spots of PIK3CA mutations are usually found in exons 9 (residues E542 and E545 of the helical domain) and 20 (residue H1047 of the kinase domain) (13, 15). In clinical practice, several drugs targeting multiple levels of PI3K/AKT/mTOR have been developed, including ATP-competitive inhibitors of the ATP-binding pocket of p110, and p110α-specific inhibitors (9, 16). A recent meta-analysis of 12,747 patients with CRC demonstrated the neutral prognostic impacts of PIK3CA mutations on overall survival (OS) and progression-free survival (PFS) (14). That study also characterized the prognostic effects of PIK3CA mutations in exons 9 and 20 separately, and neither exon 9 nor 20 mutations were found to be significantly associated with patient survival (14). Another meta-analysis of 576 patients with metastatic CRC (mCRC) demonstrated that KRAS wild type mCRC with an exon 20 PIK3CA mutation may be less susceptible to treatment with anti-EGFR monoclonal antibodies (17).
Accumulating evidence suggests that rectal cancer is distinct from colon cancer, with different risk factors, etiologies, and possible molecular characteristics (4, 18). Therefore, the clinical influence of PIK3CA mutations should be investigated separately in patients with colon and rectal cancer, while only limited data on rectal cancer are currently available. Therefore, this study assessed the clinical significance and prognostic effect of PIK3CA mutations in patients with locally advanced mid- or low-rectal cancer treated by NACRT.
Patients and Methods
Patient selection. The medical records of 145 patients with rectal cancer with residual disease who underwent surgery after NACRT at Kyungpook National University Hospital and Kyungpook National University Chilgok Hospital between January 2006 and December 2011 were retrieved from the center’s database, and their clinical and pathological information was obtained (19, 20). Representative formalin fixed paraffin-embedded (FFPE) samples of 128 unselected residual rectal cancers were collected from the tumor bank of the Department of Pathology in our hospital. All patients had histologically proven adenocarcinoma and were excluded if they showed clinical evidence of distant metastases at the time of diagnosis and time of reported ypCR. Tumors were staged according to the 7th edition of the American Joint Committee on Cancer TNM classification system. This study has been reported according to the Reporting Recommendations for Tumor Marker Prognostic Studies (REMARK) criteria (21).
Ethical statement. This study was approved by the Institutional Review Board of Kyungpook National University of Chilgok Hospital (IRB No. 2014-04-215) and was conducted in accordance with the amended Declaration of Helsinki. Informed consent was waived by the institutional review board due to the retrospective design of the study; however, all patient information was de-identified and anonymized before the study was conducted.
Preoperative treatment and surgery. All patients with clinical T3, T4, or node-positive disease received NACRT according to our standard institutional practice and underwent regular follow-up (19, 20, 22, 23). Long-course radiotherapy was administered to the whole pelvis at a total radiation dose of 45 or 50 Gy in 25 fractions (1.8 or 2 Gy per fraction, respectively) five times per week for 5 weeks (22, 23). The chemotherapy regimen was 5-fluorouracil, either as a bolus infusion (425 mg/m2/day) plus leucovorin (20 mg/m2/day) or as a continuous infusion, 5 days per week (250 mg/m2/day) during radiotherapy (22, 23). Curative surgical resection was planned within 6-8 weeks after the completion of NACRT. TME with autonomic nerve preservation was performed following the standard surgical procedure, which included low anterior, intersphincteric, and abdominoperineal resection (23). All patients were treated according to standard practice guidelines and were regularly monitored after surgery.
Histological evaluation. All available hematoxylin & eosin (H&E)-stained slides were reviewed by a single expert gastrointestinal pathologist (ANS). To evaluate primary tumor response to NACRT, we used the 5-point TRG grade as initially described by Rodel et al. (3) as follows: (1) Grade 0=no regression; (2) Grade 1=regression of <25% of tumor mass; (3) Grade 2=regression of 25-50% of tumor mass; (4) Grade 3=regression of >50% of tumor mass; (5) Grade 4=complete regression or ypCR. In cases with no tumor cells within acellular mucin pools in the whole section, immunohistochemistry for cytokeratin was performed, and ypCR was reconfirmed. As mentioned above, all cases with ypCR were excluded from this study.
Prior to fixation, all surgical specimens were inked to the periphery of the mesorectum and sliced into transverse sections (22, 24, 25). The circumferential resection margin (CRM) was measured as the distance from the outermost part of the tumor cells to the inked fascia recti using a microscope graticule (22, 24, 25). CRM positivity was considered ≤1 mm (24). When cases with CRMs of 1-2 mm were detected, additional multiple-level serial and deep sections were performed to identify CRM positivity by hidden tumor cells (24).
Detection of PIK3CA mutations. Genomic DNA was extracted from FFPE tissue sections of surgically resected residual rectal cancers after NACRT using the Maxwell® 16FFPE Tissue LEV DNA Purification kit (Promega, Seoul, Republic of Korea), according to the manufacturer’s protocol. Briefly, residual tumor areas were marked on H&E-stained slides by a pathologist (ANS), and three to five serial sections (5 μm-thick) were cut and manually dissected using blades.
PIK3CA mutations were evaluated for the presence of exons 9 (codon 542, codon 545, and codon 546) and 20 (codon 1047) using the PNAClamp™PIK3CA mutation detection kit (Panagene, Daejeon, Republic of Korea) in a peptide nucleic acid (PNA)-mediated real-time polymerase chain reaction (PCR) according to the manufacturer’s instructions. The cycle threshold (Ct) values for the control and mutation assays were automatically calculated using SYBR Green amplification plots, followed by calculation of delta-Ct values. A high delta-Ct value indicated that the mutant was efficiently amplified. The cutoff value of delta-Ct was regarded as 2 for PIK3CA mutations.
Detection of KRAS and BRAF mutations. KRAS exon 2 (codons 12 and 13) and BRAF V600E mutation status were confirmed by PNA-mediated real-time PCR using PNAClamp™ KRAS and PNAClamp™ BRAF Mutation Detection kits (Panagene), as described above. KRAS and BRAF mutation status was used as our data analyzed previously (19, 20, 22, 26).
Statistical analyses. All results were analyzed using SPSS version 18.0 for Windows (SPSS Inc., Chicago, IL, USA). The correlation between clinicopathological parameters and PIK3CA mutation was assessed using the Chi-square or Fisher’s exact test, as appropriate. The Pearson correlation (R) test was used to evaluate the correlation between PIK3CA mutations and other molecular results, such as KRAS and BRAF mutations, and HER2 amplification. Disease-free survival (DFS) and cancer-specific survival (CSS) were calculated using the time-to-event method to account for censoring. DFS was defined as the time from surgery to disease recurrence or death, and CSS was calculated as the time from surgery to death caused by rectal cancer, as applicable. Survival curves for DFS and CSS were constructed using the Kaplan–Meier method, and significance was estimated using the log-rank test. Variables with p<0.05 in univariate analysis were included in the Multivariate Cox proportional hazards regression. Hazard ratios with 95% confidence intervals were calculated for each factor. All tests of significance were two-tailed, and statistical significance was considered at p<0.05.
Results
Patient characteristics. PIK3CA mutations results were obtained in 109 (85.2%) of the 128 FFPE residual rectal cancer specimens after NACRT due to poor DNA quality in 19 samples. In the end, data from 109 patients were included in the analysis. Of those with PIK3CA mutations results available, three patients (2.8%) had PIK3CA mutations, and all of these were detected in exon 20 of the PIK3CA gene. Of the 109 included patients, 77 (70.6%) patients were men and 32 (29.4%) were women, with a median age of 61 (range=29-85). For pathological stage, according to the 7th AJCC TNM classification system, 21 tumors (19.3%) were ypstage I, 52 (47.7%) were ypstage II, and 36 (33.0%) were ypstage III. When compared according to clinical staging, 70 (64.2%) patients experienced tumor down-staging after NACRT. Four patients (3.7%) were scored as TRG 0, 18 (16.5%) as TRG 1, 44 (40.4%) as TRG 2, and 43 (39.4%) as TRG 3.
Association with clinicopathological parameters. As summarized in Table I, PIK3CA-mutated patients were significantly more likely to have higher lymphovascular invasion (p=0.016), metastatic lymph nodes (p=0.034), higher pathological stages (p=0.040), and a lack of tumor down-staging after NACRT (p=0.044), compared to PIK3CA wild-type patients.
The association between clinicopathological parameters and PIK3CA mutations.
Differences in patient outcomes. At the time of our final analyses (December 2017), the median follow-up time was 75.6 months (range=3.1-141.7 months), during which 48 patients (44.0%) experienced recurrence and 34 (31.2%) died of rectal cancer. As shown in Figure 1, patients with PIK3CA mutations had shorter CSS (p=0.001) and DFS (p=0.006) than PIK3CA wild-type patients. In a Cox proportional hazard model adjusted for ypT category, ypN category, TRG, venous invasion, lymphatic invasion, perineural invasion, and CRM, no significant difference in survival was observed with respect to PIK3CA mutations (CSS p=0.319, HR=1.961, 95% CI=0.521-7.378; DFS p=0.219, HR=2.340, 95% CI=0.604-9.066) (Table II). N category, venous invasion, and CRM were found to be independent prognostic factors for CSS and/or DFS.
Kaplan–Meier curves for (A) cancer-specific survival (CSS) and (B) disease-free survival (DFS) by PIK3CA mutations status. Patients with PIK3CA mutations (green line) had reduced CSS and DFS as compared to patients with wild-type (blue line), using the log-rank test.
Multivariate analyses for cancer-specific survival and disease-free survival.
Discussion
In this study, we investigated the prevalence of PIK3CA mutations and their associations with clinicopathological parameters, as well as the relationship between PIK3CA mutations and clinical outcomes in patients with residual rectal cancer after NACRT. We detected an overall somatic mutation rate of 2.8% (3/109 patients), all of which were detected in exon 20 of the PIK3CA gene when the common hotspots C775 (H1047R, H1047Y, and H1047L), C760 (E542K, E542G, and E542V), C763 (E545K, E545G, and E545D), and C764 (Q546E, Q546K, Q546P, and Q546R) were tested. Among these 13 hotspots, H1047R in exon 20, and E545K and E542K in exon 9 represent 87% of all currently known mutations in the PIK3CA gene (27). Our low prevalence is in contrast to that of other previously published meta-analyses on PIK3CA mutations in CRC patients that reported PIK3CA mutations in 10-18% of patients with CRC (14, 17). However, as previously mentioned, rectal cancer can be distinguished from colon cancer based on its possible molecular characteristics. Furthermore, because our cases were specimens that had undergone NACRT, the results may have differed from those whose samples were taken before NACRT (28, 29). Sclafani et al. reported that PIK3CA mutations were found in 9% of patients with locally advanced rectal cancer in one multicenter study (30). They evaluated PIK3CA mutations in paired biopsy and resection specimens and found a mutation rate of 11% in pre-NACRT biopsy samples and 3% in resection specimens after NACRT. The mutation rate of their post-resection specimens was similar to our result of 2.8% (30). Sclafani et al. also showed that the concordance rate between the two was 96% for PIK3CA mutations (30). In their study, despite a high concordance, a definite difference in PIK3CA mutations rates between biopsy and resection specimens suggested that PIK3CA mutations may be associated with a response to NACRT. In our results, PIK3CA mutations were correlated with the absence of tumor down-staging following NACRT, although there was no association with TRG. Consistent with our hypothesis, Chang et al. found 12 gene mutations that were more frequently observed in patients with CR than in those with a poor response before NACRT. These genes included ATM, BRAF, CDKN2A, EGFR, FLT3, GNA11, KDR, KIT, PIK3CA, PTEN, PTPN11, SMAD4 and TP53 (31). Therefore, in future studies, it would be beneficial to compare biopsy specimens before NACRT and surgical specimens after NACRT in terms of changes in molecular and/or microenvironments.
We also found that PIK3CA mutations were detected in residual rectal cancers with poor characteristics (presence of lymphatic invasion and lymph node metastasis, high pathological stage, and absence of tumor down-staging after NACRT). Zhu et al. reported that the presence of PIK3CA mutations is an independent predictor of distant metastasis in CRC (32). In addition to this, our results showed that PIK3CA mutations were closely correlated with poor CSS and DFS, although their prognostic independence was not demonstrated. In CRC, the association between PIK3CA mutations and prognosis presents conflicting results (14, 33-37). Previously published meta-analyses have suggested that PIK3CA mutations have neutral prognostic effects on OS and PFS (14). Interestingly, Manceau et al. reported that PIK3CA mutations are associated with good prognoses in patients with microsatellite stable stage I-III colon cancer in their multicenter study (34). In contrast, other studies have shown that PIK3CA mutations are associated with poor survival, which is consistent with our findings (35-37). However, most previous retrospective studies have reported mixed sets of patients with colon and rectal cancers. Among these studies, He et al., who evaluated rectal cancer only, showed that PIK3CA mutation is an independent predictor for the development of local recurrences, along with TNM stage in stages I-III rectal cancer without NACRT (37). However, Sclafani et al. reported no association between PIK3CA mutations and their baseline prognostic factors (30). Unfortunately, unlike their study, our study evaluated a homogenous cohort of patients with locally advanced stage II/III rectal cancer treated with NACRT at a single institution. To the best of our knowledge, this is the first report of PIK3CA mutation and its aggressive behavior in East Asian patients with residual rectal cancers after NACRT.
PIK3CA regulates the phosphatidylinositol-3-kinase (PI3K)/protein kinase B (AKT) pathway, and its mutations have been found in a variety of cancers (38, 39). Clinical trials evaluating the efficacy of PI3K/AKT/mTOR axis inhibitors in patients with advanced cancers and PIK3CA mutations are currently underway (38, 40). Recently, alpelisib, a PI3K inhibitor, was approved by the Food and Drug Administration of the United States and by the European Medicines Agency, for patients with PIK3CA-mutated, hormone receptor-positive, HER2-negative advanced or metastatic breast cancer (41-43). In contrast, everolimus (an mTOR inhibitor) plus paclitaxel did not lead to improved outcomes in patients with previously treated metastatic gastric/gastroesophageal junction cancers (RADPAC trial; NCT01248403) (44). Taken together, although it is not known whether PIK3CA can be a therapeutic target in patients with locally advanced rectal cancer, our data may help to advance basic knowledge and further develop PIK3CA-targeted therapies.
One of the main limitations of this study is its small sample size and retrospective nature of data collection from a single institution. As a result, an inherent selection bias may have influenced our results. In addition, there may not be enough statistical power in this dataset to make a conclusive statement regarding the clinical significance of our findings. As mentioned above, the unavailability of a comparison between PIK3CA mutations and biopsy specimens before NACRT is another key limitation. However, these findings can serve as a basis for further studies on the subject with large patient numbers and multiple institutions.
Conclusion
In conclusion, we showed that PIK3CA mutations are associated with lymphatic invasion, lymph node metastasis, and poor outcomes, despite their rarity (2.8%) in patients with residual rectal cancer after NACRT. Our data suggest that PIK3CA mutations may increase tumor aggressiveness, and thus might be a potential therapeutic target in rectal cancer, although future confirmatory investigations in this vein are warranted. Furthermore, a large-scale study of the clinical effect of PIK3CA mutations on the response to NACRT by comparing pre-NACRT biopsies and post-NACRT resection specimens is required.
Acknowledgements
These cases were presented as posters at the USCAP 108th Annual Meeting in 2019. In addition, this research was supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Science, ICT, and Future Planning (grant number: NRF-2015R1C1A1A02037597).
Footnotes
Authors’ Contributions
A.N. Seo made substantial contributions to the conception and design of this study. J. Byun and A. N. Seo wrote and revised the first draft and reviewed the final article. J. Byun and A. N. Seo conducted experiments. A.N. Seo performed statistical analyses. J. Y. Park, G. Yoon, M. K. Kang, H. J. Kim, S. Y. Park, J. S. Park, G. S. Choi, J. H. Baek and J. G. Kim collected and interpreted clinical data and specimens. All Authors approved the final version of the manuscript and agreed to be accountable for all aspects of the work.
Conflicts of Interest
The Authors declare no conflicts of interest.
- Received January 24, 2023.
- Revision received February 13, 2023.
- Accepted February 14, 2023.
- Copyright © 2023 International Institute of Anticancer Research (Dr. George J. Delinasios), All rights reserved.







