Abstract
Background/Aim: The Mediator complex is a key regulator of gene transcription, and several studies have demonstrated altered expression of particular subunits in diverse human diseases, especially cancer. To date, nothing is known about the role of MED30 in bladder cancer. Materials and Methods: We, therefore, performed an RNA expression and survival analysis of the subunit MED30 in 537 samples of bladder cancer by using the database cBioPortal. To validate these data on the protein level, we practiced immunohistochemical staining against MED30 on a tissue microarray containing 210 samples of all tumour stages and performed survival analyses. For functional analysis, the siRNA-mediated knockdown of MED30 was performed in the cell lines T24 and TCCSUP followed by proliferation, migration, and invasion assays. Results: On the mRNA and protein levels, higher expression of MED30 is associated with better patient survival. In accordance with this, advanced T- and N-stages showed lower expression of MED30. In contrast, knockdown of MED30 led to reduction of the tumour parameters proliferation, migration, and invasion in the BCa cell lines. Conclusion: MED30 appears to be integrated in the progression of the urothelial tumour in the bladder.
In Germany, urinary bladder cancer (BCa) was the fourth and 14th most common malignancy in men and women, respectively, in 2012 (1). Approximately 5,400 people, a quarter of whom were women, were diagnosed with invasive urinary bladder cancer in 2012. In addition, approximately 13,500 patients suffered from non-invasive papillary carcinomas and in situ tumours of the bladder. Above all, the latter have a high tendency towards progression and recurrence. Urinary bladder cancers consist predominantly of urothelial carcinomas, which frequently occur at the same time in different parts of the bladder and urinary tract (1).
Environmental and genetic factors are significant in the development and progression of bladder cancer, although the mechanisms underlying carcinogenesis remain to be fully elucidated. Thus, identifying potential carcinogenic genes is important to develop novel therapeutic strategies and specify novel biomarkers for the diagnosis and prognosis of bladder cancer (2, 3).
MED30 is part of the multi-protein Mediator complex, that is separated into four modules: the head, middle, tail and kinase. The Mediator complex is essential for the transcription of protein-coding genes and serves as a hub for diverse signaling pathways. MED30 is a subunit of the head module. The head and middle modules are known to interact directly with RNA polymerase II, whereas the tail module interacts with gene-specific regulatory proteins (4-7).
To date, the only evidence of a possible implication of this subunit in cancers comes from a study on various breast carcinoma cell lines that express abundant amounts of MED30 (8). Another study shows overexpression of MED30 in gastric cancer tissues and cell lines (9). Moreover, MED30 overexpression increased proliferation, migration and invasion of gastric cancer cells, whereas MED30-knockdown inhibited these effects.
In a prior analysis by our working group of The Cancer Genome Atlas (TCGA) Database (unpublished data), MED30 was frequently amplified in diverse solid tumours. In BCa, MED30 showed an amplification frequency of approximately 20%, whereas no deletion of MED30 was detected.
This evidence and the low-abundance of data regarding the role of MED30 in bladder carcinoma prompted us to investigate the relevance of MED30 in urothelial carcinoma of the bladder.
Materials and Methods
Ethics statement. This investigation was conducted in accordance with ethical standards and according to the Declaration of Helsinki and national and international guidelines. Ethical approval for using human material in the present study was obtained from the Internal Review Board of the University Hospital of Bonn (IRB# 036/08 and #093/12). The study participants were anonymized before their specimens were included to the study cohort. The entire workflow of the whole study is summarized in Figure 1.
RNA expression analysis by cBioPortal. The database cBioPortal for cancer genomics (http://cbioportal.org, Version 1.4.0) was utilized to investigate the mRNA expression of MED30 in BCa extended by survival analysis. cBioPortal provides a Web resource for exploring, visualizing and analysing multidimensional cancer genomics data. The portal reduces molecular profiling data from cancer tissues and cell lines into readily understandable genetic, epigenetic, gene expression and proteomic events (10, 11). For the analysis, RNA sequencing data from “The Cancer Genome Atlas” (TCGA) (12) were used (RNA Seq V2 RSEM) with two SDs from the mean and a threshold ±2.0. The mRNA z-scores are precomputed from the expression values and are compared to the expression distribution of each gene tumours that are diploid for this gene [9]. Two mRNA analyses for bladder urothelial carcinoma, named “Bladder Urothelial Carcinoma TCGA, Nature 2014” and “Bladder Urothelial Carcinoma TCGA, Provisional”, are available on cBioPortal with 129 and 408 samples, respectively.
Tissue microarray construction. The bladder cohort used in this study, provided by the Clinic for Urology of the University Hospital Bonn, contained 20 benign samples, 46 non-muscle invasive bladder cancer (NMIBC) samples, 105 muscle invasive bladder cancer (MIBC) samples and 39 metastases, in total n=210 samples (Table I).
Tissue microarrays (TMA) were performed as described previously (13, 14). Briefly, formalin-fixed paraffin-embedded (FFPE) tissues were cut into 4-μm-thick sections and mounted on slides. After staining with haematoxylin and eosin (H&E), relevant areas of benign tissue and primary tumour were identified and circled by a pathologist. Each tumour and corresponding benign region was represented with up to three cores measuring 0.6 mm in diameter on a TMA recipient block using a semiautomatic tissue arrayer (Beecher Instruments, Sun Prairie, WI, USA). H&E TMA sections were assessed again to confirm the histology.
MED30 protein expression analysis by immunohistochemistry (IHC) in bladder cancer. Prior to performing IHC analyses in the selected TMAs, the specificity of the antibody was confirmed according to the manufacturer's instructions by using stomach cancer as a positive control. IHC was performed using the Ventana Benchmark automated staining system (Ventana Medical System, Tuscon, AZ, USA) as described previously (15-18). Briefly, slides were incubated with the primary antibodies according to the manufacturer's instructions: anti-MED30 rabbit polyclonal (1:250, clone 16787-1-AP, Proteintech, Chicago, IL) at room temperature; antibody dilution was conducted using a Ventana diluent. For signal detection, the ultraView Universal DAB detection kit (Ventana Medical System, Tuscon, AZ, USA) was used. Finally, slides were counter-stained with haematoxylin and bluing reagent, dehydrated and mounted.
After IHC was performed, the staining was evaluated independently by two pathologists (GK, TM). Only cases with at least one assessable TMA core with sufficient tumour tissue were included in the analysis.
Quantification of protein expression was evaluated according to the Immunoreactivity Score (IRS) (19). Briefly, IRS considers the amount of immunoreactive cells as well as the intensity of the nuclear staining. IRS is calculated as the “percentage of immunoreactive tumour cells” (0=0%, 1=≤10%, 2=10%-50%, 3=51%-80%, 4=≥80%) × “nuclear staining intensity” (from 0=no expression to 3=strong expression). An IRS of 0 was interpreted as none or a weak expression. An IRS from 1 to 3 was interpreted as a weak to medium expression. An IRS of 4 and above was interpreted as a high expression (overexpression). We decided on a score of 4 or higher, as it reflects cases which either visibly express MED30 in virtually all cancer cells, or harbour at least a marked or strong expression in 11%-50% (or more) of cancer cells. Notably, the statistical correlations were performed with the full-range MED30 IRS and not with the dichotomized categories (i.e. overexpression vs. weak-to-medium expression), thus the distinction between overexpressing and non-overexpressing cases had no effect on these analyses.
Clinical data and statistics. Associations with clinico-pathological parameters were performed. Survival analysis was evaluated by Kaplan-Meier estimator and log-rank tests. Statistical evaluation was performed using the Student's t-test by Microsoft Excel and SPSS. The data were analysed anonymously.
Cell lines and culture conditions. Urothelial bladder carcinoma (BCa) cell lines T24 and TCCSUP were purchased from the American Type Culture Collection (ATCC®, Manassas, VA) and were grown in a 5% CO2 incubator at 37°C and 85% humidity. Monolayer cultures were maintained in RPMI1640 medium (Biochrom), supplemented with 10% heat-inactivated fetal calf serum (FCS, Sigma, St. Louis, MO, USA), 1% streptomycin-penicillin antibiotics (Gibco®), and 1% glutamine (Thermo-Scientific Fisher, Darmstadt, Germany).
SiRNA-mediated MED30 knockdown. MED30 siRNA (sc-77529, Santa Cruz, TX, USA) was a pool of three target-specific siRNAs designed to knock-down gene expression. A non-targeting scrambled siRNA was used as the negative control (Exiqon Life Sciences, Copenhagen, Denmark). T24 and TCCSUP cells were transfected with 100 nmol/L siRNA using Screenfect A (Genaxxon Bioscience GmbH, Ulm, Germany) for 48 and 72 h, respectively. Western blot. Post-transfected cells were washed with ice-cold phosphate buffered saline (PBS) and lysed in a protein extraction buffer for 30 min. In addition, samples were sonicated for 2 minutes and subsequently centrifuged at 16,000 × g for 30 min at 4°C. Protein concentration was measured using bicinchoninic acid (BCA) Protein Assay Kit (Thermo Fisher Scientific), fractionated by SDS-Page, and transferred into a nitrocellulose membrane. After incubation with 5% non-fat milk in TBST (50 mM Tris, 150 mM NaCl, 0.05% Tween 20, pH 7.5) for 60 min, the membrane was incubated with anti-MED30 rabbit polyclonal (1:200, clone 16787-1-AP, Proteintech, Chicago, IL, USA) or anti-GAPDH rabbit monoclonal (1:2,000, clone 14C10, Cell Signaling Technology, Danvers, MA, USA) primary antibodies at 4°C overnight. Then, the membrane was washed three times for 5 min with TBST and incubated with horseradish peroxidase conjugated anti-rabbit antibody for 1 h at room temperature. Staining was detected by using SuperSignal West Femto Maximum Sensitivity Substrate, an ultra-sensitive enhanced chemiluminescent (ECL) substrat (Thermo Fisher Scientific).
Quantitative reverse transcription PCR (qRT-PCR). RNA was isolated from cell line pellets using the Total RNA Purification Mini Spin Column Kit (Genaxxon Bioscience GmbH). RNA quantity and quality was analysed using a NanoDrop 2000 spectrophotometer (Thermo Scientific). The cDNA was synthesized using 200 ng total RNA and the PrimeScript RT Reagent Kit with gDNA Eraser (Takara Bio, Saint-Germain-en-Laye, France). Quantitative real-time PCR was performed by using 5 ng/μl cDNA, Takara Bio SYBR Premix Ex Taq II with ROX Plus and 10 pmol/μl forward and reverse primer. The following primer sequences were used: MED30 (Forward: 5’-ACCGGTTAACAAAGCTACAGGA-3’, Reverse 5’-TAAGTTGCTCGACTGGAATGGG-3’), and β-Actin (Forward 5’-CCAACCGCGAGAAGATGA-3’; Reverse 5’-CCAGAGGCGTA CAGGGATAG-3’). PCR was performed on an ABIPrism 7900 HT Fast Real-Time PCR System (Applied Biosystems, Foster City, CA, USA). Data were analyzed by using Qbase+ (Biogazelle, Ghent, Belgium) with β-Actin (ACTB) as the reference gene, applying the 2-ΔΔCT algorithm.
EZ4U cell proliferation assay. The EZ4U cell proliferation assay kit was used according to the manufacturer's protocol (EZ4U; Biomedica Group, Vienna, Austria). The siRNA transfections for proliferation assays were performed for 96-well plates. In each well of a flat-bottom 96-well plate, either 1.2×104 cells (T24) or 2.0×104 cells (TCCSUP) were seeded in 200 μl cell culture medium. SiRNA mediated MED30 knockdown was then performed and cells were incubated to adhere and grow for 72 h. After incubation, 20 μl of EZ4U substrate solutions were added before incubating for 3 h (T24) and 4 h (TCCSUP), until the colour of the solution changed from yellow to orange. The absorbance was measured by using a microplate reader (Tecan, Model Spectra Thermo) at 450 nm wavelength. Each experiment was repeated at least three times.
Migration assays. The siRNA transfections for migration assays were performed in 6-well plates. 48hours post-transfection, cells were trypsinized and seeded into migration boyden chambers. 3×104 cells (T24) or 5×104 cells (TCCSUP) were plated in the upper chamber of migration inserts (VWR, Darmstadt, Germany) containing 0 % FCS medium. The lower chamber was filled with a medium containing 10% FCS for chemotactic attraction. After 24 h, BCa cells were fixed with 4% paraformaldehyde (Merck, Darmstadt, Germany), stained with haematoxylin (Waldeck, Münster, Germany), and washed with water. Membranes were scanned and manually evaluated by counting. Each experiment was repeated at least three times.
Invasion assays. The siRNA transfections for invasion assays were performed in 6-well plates. 48 h post-transfection, cells were trypsinized and seeded into matrigel invasion chambers. 7.5×104 cells were plated in the upper chamber of invasion inserts (VWR, Darmstadt, Germany), containing 0% FCS medium. The lower chamber was filled with a medium containing 10% FCS for chemotactic attraction. After 24 h, BCa cells were fixed with 4% paraformaldehyde (Merck, Darmstadt, Germany), stained with haematoxylin (Waldeck, Münster, Germany), and washed with water. Membranes were scanned and manually evaluated through counting. Each experiment was repeated at least three times.
Results
Transcriptional expression of the MED30 by cBioPortal. Using the cBioPortal database, we analyzed the mRNA expression of MED30 in bladder urothelial carcinoma samples. In two analyses, 129 and 408 samples of bladder urothelial carcinoma (given by TCGA) were investigated. The results of the expression analyses are shown in Figures 2 and 3 and those for overall and disease-free survival in Figure 4.
Transcriptional mRNA expression regarding the database cBioPortal. In the first selected analysis, named “Bladder Urothelial Carcinoma TCGA, Provisional”, an alteration of MED30 is described in 20% (80/408) of the samples. In detail, 79 up-regulations and one down-regulation of the mRNA expression of MED30 were found (Figure 2).
The second analysis, called “Bladder Urothelial Carcinoma TCGA, Nature 2014”, included 129 samples. An alteration of MED30 is described in 20% (26/129) of the samples. In detail, 25 samples showed up-regulation, and one sample showed down-regulation of MED30 mRNA expression (Figure 2).
As shown in Figure 3, the alterations of MED30 in BCa are especially gain-of-function-mutations and amplifications. Deletions are rare.
Survival analysis regarding transcriptional expression. In the analysis, “Bladder Urothelial Carcinoma TCGA Provisional”, the overall survival divided by an altered MED30 mRNA expression showed a tendency, unfortunately not significant, for samples with an alteration of MED30 (predominantly overexpression) to have better overall survival (log rank test: p=0.361; samples with alteration (97.04 months) vs. without alteration (33.11 median survival months) (Figure 4A).
Considering disease-free survival, the results showed the same nonsignificant tendency (log rank test: p=0.708; samples with alteration (55.16 months) vs. without alteration (30.12 median disease-free months) (Figure 4B).
In the analysis called “Bladder Urothelial Carcinoma TCGA, Nature 2014”, the overall survival of samples with alteration of MED30 (predominantly overexpression) showed a significantly better overall survival than patients without alteration [log rank test: p=0.01; with alteration (N.A.=not available) vs. without alteration (median 19.49 months' survival)] (Figure 4C).
Contradictory results are given in this analysis for disease-free survival. For this, samples with alteration performed worse than those without alteration of MED30 mRNA expression, but the results were not significant (log rank test: p=0.541; 6.93 vs. 8.54 median disease-free months (Figure 4D).
In conclusion, in the analysis of the database cBioPortal, an approximately 20% up-regulation of the mRNA level was found with an influence on the overall expression. For overall survival, a clear tendency towards a significant difference (p=0.01) existed for the groups with and without alterations. Interestingly, patients with amplified and overexpressed MED30 had a favourable outcome, suggesting MED30 amplification as a predictive marker.
Immunohistochemistry. To validate the transcriptional mRNA data obtained from the analysis of the cBioPortal database, we performed clinical analyses on large tissue microarray (TMA) cohorts with the available clinical information.
For the calculation of MED30 protein expression in the progression of urothelial bladder cancer, a large tissue microarray (TMA) including 210 BCa patient samples (Table I) of all tumour stages and benign urothelium was analysed by immunohistochemistry (IHC) followed by IRS analysis. In the immunohistochemical analysis, we investigated the expression of MED30 in the cell nuclei. Cytoplasmic expression was very rare and seemed not to be specific (Figure 5). The highest nuclear expression of MED30 was found in normal tissue (median IRS=7.5, SD 2.918). Regarding progression, higher tumour stages were associated with a significantly lower expression of MED30 (T1 IRS=6.00, SD 5.105, p=0.767, up to T4 IRS=0.00, SD 0.177, p≤0.001, and metastases IRS=0.00, SD 1.820, p≤0.001) (Figures 5 and 6A). Further, in non-muscle invasive BCa (NMIBC=pTis and pT1; IRS=4.00, SD 0.177) the expression intensity of MED30 was lower compared with the benign transitional epithelium (Figure 6B, p=0.228) and further falling in muscle-invasive tumour stages (MIBC=T2–T4; IRS=0.00, SD 1.820, p≤0.001) (Figure 6B).
The expression of MED30 in pTis was lower (IRS=1.5, SD 4.266, p=0.094) than the expression in control tissue (IRS=7.50, SD 2.918) or pT1 (IRS=6.00, SD 5.105) (Figure 6A), which may also underline the clinical relevance of Tis, which is associated with a significantly higher risk of tumour progression. Overall, the expression of MED30 decreased significantly from benign tissue over NMIBC up to MIBC. Furthermore, positive lymph node status (≥N1, IRS=0.00, SD 3.509, p=0.005, Figure 6C) and advanced grading (G3; IRS=0.00, SD 4.080, p=0.016, Figure 6D) were associated with lower MED30 expression. In contrast to this and to the lowest expression being found in metastases, a positive metastatic status (M1) was not associated with lower MED30 expression (p=0.78, data not shown), probably due to the low numbers of metastasized samples (n=39, Table I). Additionally, the expression of MED30 was significantly lower in metastases (p≤0.001 Figure 6A).
According to these results, patients with low MED30 protein expression showed a tendency towards an unfavourable clinical outcome and decreased survival evaluated by Kaplan-Meier estimator and log-rank test (Figure 7). Unfortunately, this relationship was not significant (cancer-specific survival p=0.211, progression-free survival p=0.198).
Functional analysis. After the knockdown of the subunit MED30 mediated by siRNA, the results of functional analysis are in complete contrast expected according to the results given by of cBioportal and the IHC.
Shown in Figure 8, the siRNA mediated knockdown led to a significant reduction of the proliferation (T24 p≤0.001, TCCSUP p≤0.001), migration (T24 p=0.002, TCCSUP p≤0.001), and invasion (T24 p≤0.001, TCCSUP p≤0.001).
In conclusion, MED30 protein expression decreased during the progression from benign to high tumour stages and seems to be play a tumour supressing role on protein level. The contrasting role was found in the functional analysis in the cell lines.
Discussion
Since the discovery of the Mediator complex by Kornberg in yeast and humans (20), multiple investigations in to different Mediator complex subunits in diseases such as cancer have been performed, and altered expression of the subunits have been found. The mediator complex is an important regulator of the transcription machinery and consists of ~33 subunits. The head and middle module interact with the polymerase II, whereas the tail and kinase module communicate with transcription factors and link up to signalling pathways (4-7). To date, the role of the subunit MED30 in the progression of bladder urothelial carcinoma has never been investigated.
MED30 is part of the tail module and altered expressions of MED30 has been described in several diseases, although the exact functional role is only poorly understood. In HIV, the knockdown of the MED30 proteins significantly impaired the viral replication (21). Alternative transcripts of MED30 subunit expressed only in circulating immature progenitor cells (22). For cardiomyopathy, a missense mutation in MED30 causing progressive cardiomyopathy in homozygous mice (23). Various breast carcinoma cell lines expressed abundant amounts of MED1, MED24, and MED30 (8). Furthermore, a MED30 overexpression was found in gastric cancer cells (9).
In our study, we examined the role of MED30 in urothelial cancer. In our first investigation, we utilized the platform cBioPortal and found out that an overexpression of MED30 on the mRNA level is associated with a tendency toward favourable patient survival (Figure 4). Our results of the immunohistochemistry supported these findings: higher tumour stages, like T3 and T4 (MIBC) (Figure 6A and B), the presence of lymph node metastases (Figure 6C) and higher grading of the tumour (Figure 6D), which are associated with a worse outcome, showed a strongly reduced expression of MED30. This leads us to the conclusion that MED30 appears to have a tumour-suppressing role in bladder cancer. However, the results of the functional analysis diverge completely to the results of the cBioportal and the IHC: the knockdown of MED30 reduced the proliferation, migration, and invasion of the BCa cell lines. These parameters are crucial for the progression of tumours and necessary for the metastatic spread. The reduction of theses parameters after the knockdown suggest an oncogenic impact of MED30 in bladder carcinoma.
The role as a tumour suppressor has already been described for other subunits such as MED1 in melanoma (24), lung cancer (25, 26) and urothelial cancer (27). In melanoma, the down-regulation of the tail module MED1 triggers a strong tumorigenic phenotype (24) and is associated with worse outcome in lung adenocarcinoma (25). Interestingly, loss of MED1 promotes the appearance of metastases of non-small-cell lung cancer cells by modulating metastasis-related genes (26) and was associated with the down-regulation of tumour suppressor gene dapk1 (28).
Additionally, it must be discussed that other mediator subunits in different cancer entities have an oncogenic, not a suppressing, character. The reason for this can be found in the connection to different signalling pathways (like Wnt- or TGFβ-signalling pathway) or to further transcription factors (coactivators vs. inhibitors). Additionally, a possible explanation might be that some subunits, such as MED1, as coactivators of nuclear hormone receptors, are necessary in hormone-dependent tumours such as prostate (29) or breast cancer (30), whereas in other cancer entities such as melanoma (24), lung cancer (25) and BCa (27), down-regulation of MED1 increases tumorigenic potential by modulating metastasis-related genes such as uPAR.
Differences in activating or inhibiting character can even be found in the same subunit. In another of our analyses, we investigated MED30 in renal carcinoma (manuscripct in preparation). These results showed a partly deviating tendency towards the results for bladder cancer: in the progression to higher tumour stages, the expression of MED30 increased in the IHC analysis. This might be explained by the completely different origins of the tumours and gene profiles involved. For example, in bladder cancer, N-acetyltransferases are of special interest, the so-called “ultra-slow” acetylators have a higher risk for bladder cancer (31, 32). Additionally, enhanced expression of oncogenes such as ras and C-MYC or reduced activity of tumour suppressor genes such as p53, p21 or retinoblastoma-gen Rb are frequent in bladder cancer (33). In contrast, for renal cell carcinoma, overexpression of VEGF/R-, PDGF, TGF and FGF induced by hypoxia is known (34, 35).
The divergent characters of the same subunit in the same tumour entity have not been described yet and require further investigations and validation for a possible explanation.
Conclusion
MED30 appears to be integrated in the progression of urothelial bladder cancer. Further investigations are necessary to discover which signaling pathways and regulatory procedures are the important steps in the progression of bladder cancer.
Acknowledgements
The study was supported by the Ferdinand Eisenberger-Fellowship of the German Society of Urology (DGU) (SYI1/FE-13), and the Maria von Linden-Program of the University of Bonn for IS.
Footnotes
↵* These Authors contributed equally to this study.
Conflicts of Interest
The Authors declare no conflicts of interest.
- Received August 30, 2017.
- Revision received October 4, 2017.
- Accepted October 11, 2017.
- Copyright© 2017, International Institute of Anticancer Research (Dr. George J. Delinasios), All rights reserved